WebDec 1, 2024 · The DNAphi method uses a sliding-window approach to mine results from non-linear Poisson-Boltzmann (NLPB) calculations on DNA structures derived from all …
Electrostatic Interactions between Arginines and the Minor …
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WebNov 1, 2024 · We developed a high-throughput method, named DNAphi, to predict minor-groove EP based on data mining of results from solving the nonlinear Poisson-Boltzmann … WebOct 11, 2024 · Corresponding spheres defined by DNAphi are represented by spheres in each structure, with red indicating below-average EP values ≤-6.505 kT/e and pink … WebJun 22, 2024 · An analysis by DNAphi indicated that the majority of them contain at least one CRE promoter that could be preferentially recognized by CRTC, with strong electrostatic potential in the DNA minor groove at base pairs − 5/− 6 or 5/6 (Fig. S8 and Table S5). This is consistent with the notion that these genes are direct targets of CRTC. piada university heights